1. Because she was making you calculate everything by hand. Sums of squares require a different formula* if sample sizes are unequal, but statistical software will automatically use the right formula. So we’re not too concerned. We’re definitely using software.
2. Nice properties in ANOVA such as the Grand Mean being the intercept in an effect-coded regression model don’t hold when data are unbalanced. Instead of the grand mean, you need to use a weighted mean. That’s not a big deal if you’re aware of it. [Read more…] about When Unequal Sample Sizes Are and Are NOT a Problem in ANOVA