If you’ve been doing data analysis for long, you’ve probably had the ‘AHA’ moment where you realized statistical practice is a craft and not just a science. As with any craft, there are best practices that will save you a 
lot of pain and suffering and elevate the quality of your work. And yet, it’s likely that no one may have taught you these. I know I never had a class on this. (more…)
As it has been said a picture is worth a thousand words and so it is with graphics too. 
A well constructed graph can summarize information collected from tens to hundreds or even thousands of data points. But not every graph has the same power to convey complex information clearly. (more…)
One component often overlooked in the ‘Define & Design’ phase of a study, is writing the analysis plan. The statistical analysis plan integrates a lot of information about the study including the research question, study design, variables and data used, and the type of statistical analysis that will be conducted.
The field of statistics has a terminology problem.
It affects students’ ability to learn statistics. It affects researchers’ ability to communicate with statisticians; with collaborators in different fields; and of course, with the general public.
It’s easy to think the real issue is that statistical concepts are difficult. That is true. It’s not the whole truth, though. (more…)
Every time you analyze data, you start with a research question and end with communicating an answer. But in between those start and end points are twelve other steps. I call this the Data Analysis Pathway. It’s a framework I put together years ago, inspired by a client who kept getting stuck in Weed #1. But I’ve honed it over the years of assisting thousands of researchers with their analysis.
Have you ever compared the list of model assumptions for linear regression across two sources? Whether they’re textbooks, lecture notes, or web pages, chances are the assumptions don’t quite line up.
Why? Sometimes the authors use different terminology. So it just looks different.
And sometimes they’re including not only model assumptions, but inference assumptions and data issues. All are important, but understanding the role of each can help you understand what applies in your situation.
The actual model assumptions are about the specification and performance of the model for estimating the parameters well.
1. The errors are independent of each other
2. The errors are normally distributed
3. The errors have a mean of 0 at all values of X
4. The errors have constant variance
5. All X are fixed and are measured without error
6. The model is linear in the parameters
7. The predictors and response are specified correctly
8. There is a single source of unmeasured random variance
Not all of these are always explicitly stated. And you can’t check them all. How do you know you’ve included all the “correct” predictors?
But don’t skip the step of checking what you can. And for those you can’t, take the time to think about how likely they are in your study. Report that you’re making those assumptions.
Sometimes the assumption is not really about the model, but about the types of conclusions or interpretations you can make about the results.
These assumptions allow the model to be useful in answering specific research questions based on the research design. They’re not about how well the model estimates parameters.
Is this important? Heck, yes. Studies are designed to answer specific research questions. They can only do that if these inferential assumptions hold.
But if they don’t, it doesn’t mean the model estimates are wrong, biased, or inefficient. It simply means you have to be careful about the conclusions you draw from your results. Sometimes this is a huge problem.
But these assumptions don’t apply if they’re for designs you’re not using or inferences you’re not trying to make. This is a situation when reading a statistics book that is written for a different field of application can really be confusing. They focus on the types of designs and inferences that are common in that field.
It’s hard to list out these assumptions because they depend on the types of designs that are possible given ethics and logistics and the types of research questions. But here are a few examples:
1. ANCOVA assumes the covariate and the IV are uncorrelated and do not interact. (Important only in experiments trying to make causal inferences).
2. The predictors in a regression model are endogenous. (Important for conclusions about the relationship between Xs and Y where Xs are observed variables).
3. The sample is representative of the population of interest. (This one is always important!)
And sometimes the list of assumptions includes data issues. Data issues are a little different.
They’re important. They affect how you interpret the results. And they impact how well the model performs.
But they’re still different. When a model assumption fails, you can sometimes solve it by using a different type of model. Data issues generally stay around.
That’s a big difference in practice.
Here are a few examples of common data issues:
1. Small Samples
2. Outliers
3. Multicollinearity
4. Missing Data
5. Truncation and Censoring
6. Excess Zeros
So check for these data issues, deal with them if the solution doesn’t create more problems than you solved, and be careful with the inferences you draw when you can’t.