The Analysis Factor
Statistical Consulting, Resources, and Statistics Workshops for Researchers
Just about everyone who does any data analysis has used a chi-square test. Probably because there are quite a few of them, and they’re all useful.
But it gets confusing because very often you’ll just hear them called “Chi-Square test” without their full, formal name. And without that context, it’s hard to tell exactly what hypothesis that test is testing. [Read more…] about What is a Chi-Square Test?
In the world of statistical analyses, there are many tests and methods that for categorical data. Many become extremely complex, especially as the number of variables increases. But sometimes we need an analysis for only one or two categorical variables at a time. When that is the case, one of these seven fundamental tests may come in handy.
These tests apply to nominal data (categories with no order to them) and a few can apply to other types of data as well. They allow us to test for goodness of fit, independence, or homogeneity—and yes, we will discuss the difference! Whether these tests are new to you, or you need a good refresher, this training will help you understand how they work and when each is appropriate to use.
[Read more…] about Member Training: Seven Fundamental Tests for Categorical Data
by Steve Simon, PhD
The Cox regression model has a fairly minimal set of assumptions, but how do you check those assumptions and what happens if those assumptions are not satisfied?
The proportional hazards assumption is so important to Cox regression that we often include it in the name (the Cox proportional hazards model). What it essentially means is that the ratio of the hazards for any two individuals is constant over time. They’re proportional. It involves logarithms and it’s a strange concept, so in this article, we’re going to show you how to tell if you don’t have it.
There are several graphical methods for spotting this violation, but the simplest is an examination of the Kaplan-Meier curves.
If the curves cross, as shown below, then you have a problem.
Likewise, if one curve levels off while the other drops to zero, you have a problem.
You can think of non-proportional hazards as an interaction of your independent variable with time. It means that you have to do more work in interpreting your model. If you ignore this problem, you may also experience a serious loss in power.
If you have evidence of non-proportional hazards, don’t despair. There are several fairly simple modifications to the Cox regression model that will work for you.
The Cox model assumes that each variable makes a linear contribution to the model, but sometimes the relationship may be more complex.
You can diagnose this problem graphically using residual plots. The residual in a Cox regression model is not as simple to compute as the residual in linear regression, but you look for the same sort of pattern as in linear regression.
If you have a nonlinear relationship, you have several options that parallel your choices in a linear regression model.
Lack of independence is not something that you have to wait to diagnose until your data is collected. Often it is something you are aware from the start because certain features of the design, such as centers in a multi-center study, are likely to produce correlated outcomes. These are the same issues that hound you with a linear regression model in a multi-center study.
There are several ways to account for lack of independence, but this is one problem you don’t want to ignore. An invalid model will ruin all your confidence intervals and p-values.